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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13329505_13329997_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13329505 - 13329997
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACAGGAG
5'SS Class:
major
3'SS Sequence:
TAATCTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGAATTTAATC
Flanking Amino Acid:
DPSIMDFALHGNIWEEMKDD
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.1
48.7
41.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.8
0.67
0.9
73.2
36.7
Minor 5ss
27.3
-2.6
3.7
36.7
47.8
Minor BPS
54.2
0.11
1.5
60.68
38.7

Associated Gene:

Gene:
FOXN4
Ensembl Gene ID:
ENSAPLG00000002586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002608
13329251 - 13343671
14421