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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13330382_13331383_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13330382 - 13331383
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
ACTGCACGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TCCTTGGGAACG
Flanking Amino Acid:
AAIHRSMANPEELDKLITDR
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
58.5
0.19
1
51
37.6
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
39
-0.9
2.5
46.74
46.5

Associated Gene:

Gene:
FOXN4
Ensembl Gene ID:
ENSAPLG00000002586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002608
13329251 - 13343671
14421