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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13331592_13331676_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13331592 - 13331676
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGCATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AGTTCTCTAACA
Flanking Amino Acid:
FMKEHFPYFKTAPDGWKNSV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.1
36.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
76.9
0.6
0.9
73.1
36.9
Minor 5ss
46
-0.4
3.2
63.9
47.7
Minor BPS
66.1
0.5
1.6
75.52
35.2

Associated Gene:

Gene:
FOXN4
Ensembl Gene ID:
ENSAPLG00000002586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002608
13329251 - 13343671
14421