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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13331774_13332168_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13331774 - 13332168
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAG
U12 Branch Point Sequence:
CTGCTGTTAAGT
Flanking Amino Acid:
KHYPKPIYSYSCLIAMALKN
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
60.4
0.26
1.6
69.7
44.2
Major PPT
77.4
0.62
0.7
69.8
31.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46
-0.2
2.3
64.1
46.5

Associated Gene:

Gene:
FOXN4
Ensembl Gene ID:
ENSAPLG00000002586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002608
13329251 - 13343671
14421