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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13332558_13332640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13332558 - 13332640
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGCA
5'SS Class:
major
3'SS Sequence:
TTCATCTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTGTCTTCATCT
Flanking Amino Acid:
LNFISTHGANMSQYPVGGQP
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
70.8
33
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.6
0.55
0.9
70.6
34.7
Minor 5ss
33.1
-1.9
3.4
44.3
43.3
Minor BPS
60.1
0.39
1.8
79.92
42.4

Associated Gene:

Gene:
FOXN4
Ensembl Gene ID:
ENSAPLG00000002586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002608
13329251 - 13343671
14421