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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1334167_1349570_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1334167 - 1349570
Intron Length:
15404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAA
5'SS Class:
major
3'SS Sequence:
TTCCTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGATCTTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
69.6
36.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.1
0.68
0.8
76.9
30.3
Minor 5ss
44.4
-0.6
2.7
57.4
46.9
Minor BPS
70.4
0.62
1.3
73.57
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028392
1144737 - 1351737
207001