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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1334167_1372368_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1334167 - 1372368
Intron Length:
38202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TTCCTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGATCTTTAAAC
Flanking Amino Acid:
FPVPVGRRGMVTESRGILES
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
72.5
39.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.1
0.68
0.8
76.9
30.3
Minor 5ss
42
-0.9
3.4
56.1
48.1
Minor BPS
70.4
0.62
1.3
73.57
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024447
1144737 - 1372582
227846