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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13375430_13375969_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13375430 - 13375969
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
GATTTCCTACCT
Flanking Amino Acid:
RKRYQENLIYTYIGTLLVSV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
66.3
0.41
1
61
37.5
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
52.9
0.17
2
74.44
41.9

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274