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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13379457_13380144_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13379457 - 13380144
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAACCTTTATTT
Flanking Amino Acid:
HRKIEARSEEVLSPLNVDLA
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.6
43
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.7
81.1
29.7
Minor 5ss
32.9
-1.9
3.4
48.9
46.9
Minor BPS
53.3
0.18
1.5
66.01
38.6

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274
ENSAPLT00000026963
13375271 - 13394187
18917