About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13381184_13381828_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13381184 - 13381828
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCCTTTTATT
Flanking Amino Acid:
QEEYELEGIEWEPIPYFNNK
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.87
0.7
81.1
35.5
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
61.8
0.45
1.6
76.99
39.9

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274