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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13381910_13382700_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13381910 - 13382700
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTGGAATTAACA
Flanking Amino Acid:
QKHKGIISILDEECLRPGEA
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.9
0.51
0.9
68.8
37.2
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
49.5
-0
1.9
62.47
43.2

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274