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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13382793_13384159_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13382793 - 13384159
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
TTCCTCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
EKVGDHAHFVTRKLADQKTR
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.3
74.4
41.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
81.4
0.71
0.7
77.3
24.7
Minor 5ss
59.8
0.33
2.4
74
35.3
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003140
13375271 - 13394544
19274
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067