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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13384879_13385331_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13384879 - 13385331
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TATCCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTAACTATAACA
Flanking Amino Acid:
NDLLYRNLKEVLCNSKNGII
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80
0.67
0.9
76.9
36.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
55.8
0.18
1.7
65.93
40.2

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274