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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13387393_13388003_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13387393 - 13388003
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAGAT
U12 Branch Point Sequence:
TTTTTTTTGATA
Flanking Amino Acid:
DAFEIRKHLLVSRLQAKYKG
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57
47.3
Major BPS
58.9
0.22
1.2
54.7
43.1
Major PPT
84.9
0.78
0.8
84.2
30.9
Minor 5ss
40
-1.1
3.3
47.3
48.1
Minor BPS
74.5
0.76
1
81.02
27.4

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274