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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13388802_13389344_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13388802 - 13389344
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATTATC
5'SS Class:
major
3'SS Sequence:
ATGCTTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAACATGTAAGT
Flanking Amino Acid:
KRTWAVQIIRKFINGFINRK
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
80.9
31.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.2
0.57
0.8
70.3
35.7
Minor 5ss
42.1
-0.9
2.8
55.2
35.8
Minor BPS
42.2
-0.5
2.3
60.36
42.8

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274