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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13390481_13390954_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13390481 - 13390954
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCAAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAAAA
Flanking Amino Acid:
RGVTAERKVQLQQKVVASAV
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.8
0.4
1
63.4
36
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
55.6
0.17
1.7
64.17
42.3

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025950
13375271 - 13394337
19067
ENSAPLT00000003140
13375271 - 13394544
19274
ENSAPLT00000026963
13375271 - 13394187
18917