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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13391801_13392052_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13391801 - 13392052
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AAATGCTGACAC
Flanking Amino Acid:
LQLIQGEKIKYATPVVKYDR
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
41.6
-0.6
2
49.38
40

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003140
13375271 - 13394544
19274
ENSAPLT00000026963
13375271 - 13394187
18917
ENSAPLT00000025950
13375271 - 13394337
19067