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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13393897_13394087_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13393897 - 13394087
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATAAGTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
45.9
-0.2
2.3
68.54
41.9

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026963
13375271 - 13394187
18917