About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13394188_13394520_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13394188 - 13394520
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCGTACCTAACT
Flanking Amino Acid:
FKAKNGQLTVVSTQAKS*
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.3
0.75
0.8
76.4
37.6
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
59.4
0.37
1.9
77.73
44.2

Associated Gene:

Gene:
MYO1H
Ensembl Gene ID:
ENSAPLG00000003020
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003140
13375271 - 13394544
19274