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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13400289_13400887_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13400289 - 13400887
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
EQKLIATSNKPAVKLLYNRS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
KCTD10
Ensembl Gene ID:
ENSAPLG00000028654
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031585
13399018 - 13405078
6061