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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13410780_13410869_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13410780 - 13410869
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TGGGGTTTAACC
Flanking Amino Acid:
LCRCRLQRDIRREVEDFFGA
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
71.2
0.48
0.7
63.9
31.1
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
52.5
0.06
1.9
62.28
43.6

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826