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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13413391_13414050_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13413391 - 13414050
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTC
Flanking Amino Acid:
NQKGFYSVLQILLTNGLARS
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.2
76.2
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.9
0.81
0.8
78.1
40.1
Minor 5ss
34.2
-1.8
2.9
44.7
43.1
Minor BPS
56.8
0.19
1.6
68.82
37.9

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826