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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13414134_13414820_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13414134 - 13414820
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTGCACTGAAGT
Flanking Amino Acid:
SLTAIFSLALRPVIAAQFSD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
60.8
45.3
Major BPS
62
0.3
1
53
34.1
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
49.4
0.04
2
71.62
44.6

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826