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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13416228_13416606_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13416228 - 13416606
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCCTTTTAACA
Flanking Amino Acid:
LGWFSQTVDYGLNESMPLLT
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.1
0.7
0.9
77.4
36.3
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
66
0.5
1.2
68.82
37.6

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826