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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13417680_13418369_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13417680 - 13418369
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TATTTTTCCATT
Flanking Amino Acid:
LTQIRLQILTGLTYLDDLLP
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76
0.59
1
69.8
40.5
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
49.2
0.02
1.9
72.41
39.3

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826