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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13418542_13419301_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13418542 - 13419301
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTCCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCTCCGATA
Flanking Amino Acid:
LFCDCSRHLITILDDIEVYE
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.4
67.1
44.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76
0.59
0.9
73.7
31.5
Minor 5ss
36.1
-1.6
3
44
37
Minor BPS
51
0.03
1.9
71.12
34.9

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826