About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13420603_13421035_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13420603 - 13421035
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTTAC
U12 Branch Point Sequence:
TTTCTTTTTAAG
Flanking Amino Acid:
YIPHVIPHKNRVLLFRNMVT
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
49.4
-0
1.3
43.1
41.5
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
49.4
-0.1
1.8
61.38
40.3

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826