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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13421156_13421476_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13421156 - 13421476
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCGGTCTGCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
CCGGTCTGCATA
Flanking Amino Acid:
ITIRRSRMLEDGYEQLRQLS
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
58.2
0.19
1
52.6
36.8
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
40.7
-0.7
1.8
42.3
40.3

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826