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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13421851_13422160_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13421851 - 13422160
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TCTGCATTATTC
Flanking Amino Acid:
GKMLGKAVYEGIVVDVPFAS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
89.2
0.88
0.6
84.8
22.9
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
49.3
-0
2
62.92
43.1

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826