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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13424219_13426217_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13424219 - 13426217
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGCCAC
U12 Branch Point Sequence:
CCCCCCGCCACC
Flanking Amino Acid:
GKTIPVTNENKISYIHLMAH
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
41.1
-0.5
1.2
41.4
39
Major PPT
76
0.59
0.8
69.2
31.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
37.7
-0.9
2.4
43.27
44.5

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826