Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13426401_13426728_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13426401 - 13426728

Intron Length:

328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

CCTGTCACAACC

Flanking Amino Acid:

DNAEIDLEDLKKHTVYYGGF

Intron Amino Acid Position:

939

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

69.9

41.1

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

84.4

0.77

0.7

77.3

31.4

Minor 5ss

33.8

-1.8

3.2

40.5

39.9

Minor BPS

45.4

-0.3

1.9

54.53

43.7

Associated Gene:

Gene:

UBE3B

Ensembl Gene ID:

ENSAPLG00000004427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004609

13410079 - 13427904

17826