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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13426841_13427207_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13426841 - 13427207
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCC
5'SS Class:
strong_major
3'SS Sequence:
ATCACTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTCTCCATCACT
Flanking Amino Acid:
SPEERAMFLKFVTSCSRPPL
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
72.1
37.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.2
0.68
0.9
77
36.4
Minor 5ss
34.8
-1.7
2.9
45.4
42.6
Minor BPS
55.8
0.26
2.1
76.47
46

Associated Gene:

Gene:
UBE3B
Ensembl Gene ID:
ENSAPLG00000004427
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004609
13410079 - 13427904
17826