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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13435366_13435623_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13435366 - 13435623
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTTGCTCATT
Flanking Amino Acid:
ADPNVAKYLNRLSDYLFVLA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78.6
0.64
0.9
71.2
38.5
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
42.6
-0.5
2.5
67.26
44.4

Associated Gene:

Gene:
MMAB
Ensembl Gene ID:
ENSAPLG00000005263
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005430
13435278 - 13438533
3256