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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13435684_13436329_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13435684 - 13436329
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATGCACTAAATC
Flanking Amino Acid:
SRAVCRRAERCVVPLVQAGE
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
83.6
0.76
0.8
77.1
37.1
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
48.6
-0.1
1.8
59.15
40

Associated Gene:

Gene:
MMAB
Ensembl Gene ID:
ENSAPLG00000005263
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005430
13435278 - 13438533
3256