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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13444833_13445898_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13444833 - 13445898
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGAAT
U12 Branch Point Sequence:
TCAGCTTGAATA
Flanking Amino Acid:
CPLKDGEITASWRAEGWTEE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
67
44.2
Major BPS
62.3
0.31
1.4
73.3
39.1
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
38.9
-1.2
3.4
57.5
46.7
Minor BPS
53.6
0.11
1.5
60.44
40.2

Associated Gene:

Gene:
MVK
Ensembl Gene ID:
ENSAPLG00000005266
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042370
13443497 - 13452545
9049