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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13444833_13447043_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13444833 - 13447043
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCT
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
GTGGTTTTGAGT
Flanking Amino Acid:
CPLKDGEITARWTEEEMTLI
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
67
44.2
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
82.6
0.73
0.8
73.4
37.1
Minor 5ss
38.9
-1.2
3.4
57.5
46.7
Minor BPS
47.7
-0
1.7
62.13
42.8

Associated Gene:

Gene:
MVK
Ensembl Gene ID:
ENSAPLG00000005266
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005435
13443497 - 13452545
9049