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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13449421_13450943_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13449421 - 13450943
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CAATCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GCCTGCTCATCT
Flanking Amino Acid:
PSPEHYPVLEELFDINQHHL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
73.1
0.52
0.9
70.2
35.8
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
44.7
-0.3
2.2
60.48
48.7

Associated Gene:

Gene:
MVK
Ensembl Gene ID:
ENSAPLG00000005266
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042370
13443497 - 13452545
9049
ENSAPLT00000005435
13443497 - 13452545
9049