About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1349621_1351557_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1349621 - 1351557
Intron Length:
1937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
ATCTTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTTCTCCACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.8
0.63
0.8
69.8
36
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
53.9
0.11
2
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028392
1144737 - 1351737
207001