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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13518027_13518145_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13518027 - 13518145
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCGATCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTCTGATGAACC
Flanking Amino Acid:
FSHTVGRLRRDRWSTVVPRV
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
64.6
0.33
0.9
57.1
33
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
46.7
-0.2
2.1
60.1
44.8

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631