About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13518268_13518423_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13518268 - 13518423
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
AAAACCACACAG
Flanking Amino Acid:
DGTPDRRWCFRVDEVNWSHW
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
47.7
-0.1
1
51
32
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
36.2
-1.1
1.9
36.01
37.9

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631