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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13519007_13519198_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13519007 - 13519198
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCGGAC
U12 Branch Point Sequence:
CCCCCGCGGACT
Flanking Amino Acid:
YLLFMIGYASALVSLLNPCP
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
41.7
-0.5
1.3
32.1
34.8
Major PPT
73.2
0.52
0.8
64.5
30.9
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
37.3
-0.9
2.3
49.8
43.9

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631