About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13519266_13519348_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13519266 - 13519348
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCGCTGG
5'SS Class:
major
3'SS Sequence:
CCATCACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ATCTCCATCACT
Flanking Amino Acid:
TGTYSIMIQKILFKDLFRFL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
51.7
47.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
73.2
0.52
0.9
65.9
34.6
Minor 5ss
37.6
-1.4
3.1
47.9
47.6
Minor BPS
57.9
0.33
2.1
79.27
42.7

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631