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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13519680_13519848_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13519680 - 13519848
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
CCCTCTCCAACC
Flanking Amino Acid:
LTGILFFFTNIKDLFMKKCP
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.5
67.6
39.2
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
30.7
-2.2
3
36.2
33
Minor BPS
46.8
-0.2
1.9
54.53
43.9

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631