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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13520975_13521062_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13520975 - 13521062
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
GCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTCCCTGTAATG
Flanking Amino Acid:
PKDEGGYFYFGELPLSLAAC
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
47.3
-0.3
2
52.88
42.6

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631