About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13521204_13521449_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13521204 - 13521449
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGGGGG
5'SS Class:
major
3'SS Sequence:
GCCCATGGCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCCCAT
U12 Branch Point Sequence:
GCCACGGTGACG
Flanking Amino Acid:
NSPFRDVYYRGQTALHIAIE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
51.5
42.6
Major BPS
47.9
-0.1
1.3
55.8
41.7
Major PPT
55.3
0.12
1
47.9
39
Minor 5ss
26.8
-2.7
3.6
28.2
44
Minor BPS
37.6
-1.1
2.5
39.41
44.4

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631