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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13521603_13521743_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13521603 - 13521743
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCACTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAGCAT
U12 Branch Point Sequence:
GCATCCCCCACT
Flanking Amino Acid:
KKRLTDEEFREPSTGKTCLP
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
46.8
-0.2
1.4
53.7
41.6
Major PPT
67.1
0.38
0.8
57.1
32.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
44.6
-0.3
2.2
62.85
46.4

Associated Gene:

Gene:
TRPV4
Ensembl Gene ID:
ENSAPLG00000005295
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005486
13517469 - 13523099
5631