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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13526912_13527205_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13526912 - 13527205
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTCAG
5'SS Class:
major
3'SS Sequence:
GCTGTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
GTTCCCAAACCC
Flanking Amino Acid:
GATLALMWLKRGLKFMLVLL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
64.9
42.8
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
72.3
0.5
0.9
65.3
36.2
Minor 5ss
33.7
-1.9
2.9
40.4
45.7
Minor BPS
45.2
-0.3
2.1
61.83
43.2

Associated Gene:

Gene:
GLTP
Ensembl Gene ID:
ENSAPLG00000027969
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044639
13526419 - 13529187
2769