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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13527340_13528043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13527340 - 13528043
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
CCCCATCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
TCCCCCCCATCC
Flanking Amino Acid:
VKADLAGNIKKIRAVYDSDP
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
67.6
0.4
0.8
60.8
28.9
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
42.8
-0.5
2
52.79
44.4

Associated Gene:

Gene:
GLTP
Ensembl Gene ID:
ENSAPLG00000027969
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044639
13526419 - 13529187
2769