About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13528106_13528913_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13528106 - 13528913
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GCCCCGGTGACC
Flanking Amino Acid:
EAVAHLPPFFDCLGTPIVYS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
37.7
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
66.5
0.37
0.9
58.7
38.3
Minor 5ss
30
-2.3
3.5
41.5
45.4
Minor BPS
39.8
-0.8
2.5
47.46
42.5

Associated Gene:

Gene:
GLTP
Ensembl Gene ID:
ENSAPLG00000027969
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044639
13526419 - 13529187
2769