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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13529751_13529828_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13529751 - 13529828
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGGGAGCC
5'SS Class:
major
3'SS Sequence:
GCCGGGAGGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGGCAG
U12 Branch Point Sequence:
CAGCCCGGGAGC
Flanking Amino Acid:
EELAAELRELRAGPGGGGGG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
72.3
32.1
Major BPS
33.6
-1
1.5
32.2
43.7
Major PPT
38.6
-0.6
1.6
30.9
40.7
Minor 5ss
14.5
-4.1
3.7
23.8
37.4
Minor BPS
36.9
-1
2.2
40.32
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038127
13529341 - 13533838
4498